You should see the version number and a list of commands (index, mem, aln, etc.). If you see command not found , double-check your settings. Initializing Your First Run
For production-level bioinformatics, compiling from the source code ensures you have the latest features and bug fixes. BWA is written in C, so it’s lightweight and compiles quickly. Step 1: Install Dependencies bwa download linux
If you manage multiple bioinformatics tools, is the best way to prevent "dependency hell." You should see the version number and a
One-line command; handles dependencies automatically. Cons: Often contains older versions (e.g., v0.7.17 when v0.7.18 is available). Command: sudo apt-get update sudo apt-get install bwa Use code with caution. To verify the installation, simply type bwa . 2. The Recommended Way: Compiling from Source (GitHub) bwa download linux