To launch the graphical interface, double-click the run_fastqc.bat file located in the main folder. Step 4: Add FastQC to System PATH (Advanced)
Since FastQC does not use a traditional installer, you simply "install" it by unzipping it to a permanent location. download fastqc windows
Click on the link for the (or the most recent version available). Save the file to your computer. Step 3: Extract and Set Up To launch the graphical interface