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gcc -DOPENMP -fopenmp -O3 -finline-functions -funroll-loops -Wall -o FastTreeMP FastTree.c -lm Use code with caution. Basic Usage

FastTree is single-threaded. FastTreeMP is the multi-threaded version. If you are running FastTree on a server or a high-end workstation, always use FastTreeMP to significantly reduce execution time. download fasttree

Yes. While tools like IQ-TREE 2 are highly advanced, FastTree remains the industry standard for initial large-scale screenings and datasets that are too large for traditional ML tools to process in a reasonable timeframe. If you are running FastTree on a server

Developed by Price, Dehal, and Arkin, FastTree is the go-to tool for bioinformatics pipelines where speed is as critical as accuracy. Key benefits include: Developed by Price, Dehal, and Arkin, FastTree is

FastTree is available as a pre-compiled executable for various operating systems or as source code for manual compilation. 1. Direct Download (Pre-compiled Binaries)